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The Wire
#Sequence
Wire posts tagged with 'Sequence'
Jit
@jit.aber
Thread
By
Jit
1901 days ago
Alignment-free sequence comparison: benefits, applications, and tools
https:/
/
genomebiology.biomedcentral.com/
articles/
10.1186/
s13059-017-1319-7
#Alignment
#Sequence
BioStar
@biostar
Thread
By
BioStar
2104 days ago
The aim of this program suite is to support checks of
#Sequence
#Variant
#Nomenclature
according to the guidelines of the
#Human
#Genome
#Variation
Society.
https:/
/
www.mutalyzer.nl/
Jit
@jit.aber
Thread
By
Jit
2125 days ago
Recommendations for the description of
#sequence
#variants
https:/
/
www.hgvs.org/
mutnomen/
recs.html
Manisha Mishra
@manisha
Thread
By
Manisha Mishra
2393 days ago
Extract fasta with Ids. $ perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file
#extract
#fasta
#sequence
#ids
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2428 days ago
Get the sequences using coordinates in bed file. $ bedtools getfasta -fi input_file.fa -bed regions_file.bed
#Bed
#Extract
#Sequence
#bedtools
Jit
@jit.aber
Thread
By
Jit
2518 days ago
#Remove
a
#sequence
by id from multifasta: cat vaga.fa | awk '{if (substr($0,1) == ">scaffold_1 1087316 bp") censor=1; else if (substr($0,1,1) == ">") censor=0; if (censor==0) print $0}' > fixed.fasta
Abhimanyu Singh
@abhimanyu
Thread
By
Abhimanyu Singh
2794 days ago
#Random
#sequence
generator with
#perloneliner
: $ perl -e '$x=int(rand(1000)); printf( "chr1\t%s\t%s", $x, $x + 10)'
Abhimanyu Singh
@abhimanyu
Thread
By
Abhimanyu Singh
2794 days ago
#Extract
a
#sequence
from
#multi
-fasta file: $ perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file
Jit
@jit.aber
Thread
By
Jit
2811 days ago
AVID: A Global Alignment Program
https:/
/
www.ncbi.nlm.nih.gov/
pmc/
articles/
PMC430967/
#AVID
#Alignment
#Global
#Sequence
#Genome
Neel
@neelam
Thread
By
Neel
3135 days ago
PAired-eND Assembler for DNA sequences
https:/
/
github.com/
neufeld/
pandaseq
#Sequence
#Assembler
#PANDAseq
Archana Malhotra
@archana
Thread
By
Archana Malhotra
3139 days ago
Dynamic programming
http:/
/
www.avatar.se/
molbioinfo2001/
dynprog/
dynamic.html
#Programming
#Alignment
#Sequence
#Dynamic
Neel
@neelam
Thread
By
Neel
3150 days ago
A powerful
#multiple
#sequence
#alignment
#browser
http:/
/
wasabiapp.org/
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
3326 days ago
The BLAST parser
http:/
/
kirill-kryukov.com/
study/
tools/
blast-parser/
#BLAST
#Parser
#Genome
#Match
#Sequence
#Similarity
Jitendra Narayan
@admin
Thread
By
Jitendra Narayan
3633 days ago
Seqloc: Handle sequence locations for bioinformatics
https:/
/
hackage.haskell.org/
package/
seqloc-0.6
#Sequence
#Location
#Package
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
3643 days ago
Sequence analysis
http:/
/
bio.lundberg.gu.se/
courses/
ht03/
bio1/
bio1_e2b.html
#Sequence
#Alignment
#Algorithms
#C
#C
++
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