Hi Prachi,
There are several software/tools/server for it. Please read this paper http://www.biomedcentral.com/1471-2164/9/561 and look into corporate view and integrated database http://linux1.softberry.com/berry.phtml?topic=case_study_plants .. I...
A web application framework for R. http://shiny.rstudio.com/ It turn your analyses into interactive web applications. No HTML, CSS, or JavaScript knowledge required :)
IDE for R http://www.rstudio.com/ide/
It is available in open source and commercial editions and runs on the desktop (Windows, Mac, and Linux) or over the web with RStudio Server.