Neel2823 days ago
I want to download all the mammalian protein fasta files. Is there any quick way to download all in one click?
At UniProt search for taxonomy:mammalia in UniProtKB like this:
http://www.uniprot.org/uniprot/?query=lineage%3Amammalia&sort=score
There you can download a fasta file with all mammalian sequences with isoforms like this:
http://www.uniprot.org/uniprot/?sort=score&desc=&compress=yes&query=lineage:mammalia&fil=&format=fasta&force=yes&include=yes
or maybe just canonical reviewed sequences like this:
http://www.uniprot.org/uniprot/?sort=score&desc=&compress=yes&query=taxonomy:mammalia&fil=reviewed:yes&format=fasta&force=yes
At UniProt search for taxonomy:mammalia in UniProtKB like this:
http://www.uniprot.org/uniprot/?query=lineage%3Amammalia&sort=score
There you can download a fasta file with all mammalian sequences with isoforms like this:
http://www.uniprot.org/uniprot/?sort=score&desc=&compress=yes&query=lineage:mammalia&fil=&format=fasta&force=yes&include=yes
or maybe just canonical reviewed sequences like this:
http://www.uniprot.org/uniprot/?sort=score&desc=&compress=yes&query=taxonomy:mammalia&fil=reviewed:yes&format=fasta&force=yes