Jitendra Prajapati
A Bioinformatician
Latest comments
- Neel on REAPR: a universal tool for genome assembly evaluation (1537 days ago): Reapr is a tool trying to find explicit errors in the assembly based on...
- Jit on Venn Diagrams on R Studio (2518 days ago): Six-way Venn...
- Jit on QUAST: quality assessment tool for genome assemblies (2745 days ago): Understanding the terms used in...
- Jit on QUAST: quality assessment tool for genome assemblies (2898 days ago): You can also try LAZER, it produces the same evaluation as Quast but is...
Tag cloud
Our Sponsors
Jitendra Prajapati's bookmarks
Venn Diagrams on R Studio
By Jitendra Prajapati 3132 days ago Comments (2)rstudio-pubs-static.s3.amazonaws.com - First step: Install & load “VennDiagram” package. # install.packages('VennDiagram') library(VennDiagram) Second step: Load data Add filepath if “catdoge.csv” is not in working-directory. d <-...PhyloGrapher - Graph Visualization Tool
By Jitendra Prajapati 3150 days agowww.atgc.org - PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).PhyloGrapher is a drawing tool that generates custom graphs for a given set of elements. In...REAPR: a universal tool for genome assembly evaluation
By Jitendra Prajapati 3151 days ago Comments (1)genomebiology.biomedcentral.com - REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorrect scaffolds and...QUAST: quality assessment tool for genome assemblies
By Jitendra Prajapati 3151 days ago Comments (2)bioinformatics.oxfordjournals.org - QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome.The tool accepts multiple assemblies, thus is suitable for comparison. More...Awesome bioinformatics pipelines !
By Jitendra Prajapati 3157 days agogithub.com - A curated list of awesome pipeline toolkits ... https://github.com/pditommaso/awesome-pipelineGA4GH Data Working Group
By Jitendra Prajapati 3167 days agohttp://ga4gh.org/#/ - GA4GH Data Working Group Led by David Haussler (UCSC) and Richard Durbin (Sanger Institute), the Data Working Group (DWG) of the Global Alliance brings together the leading Genome Institutes and Centers with IT industry leaders to create global...scikit-learn
By Jitendra Prajapati 3188 days agoscikit-learn.org - Machine Learning in Python Simple and efficient tools for data mining and data analysis Accessible to everybody, and reusable in various contexts Built on NumPy, SciPy, and matplotlib Open source, commercially usable - BSD license More...destruct
By Jitendra Prajapati 3188 days agobitbucket.org - Destruct is a tool for joint prediction of rearrangement breakpoints from single or multiple tumour samples. More at https://bitbucket.org/dranew/destructsvelter
By Jitendra Prajapati 3188 days agogithub.com - This software is designed to identify both simple and complex rearrangements from paired-end sequencing data. Users could ran it easily by just alling SVelter.py with proper parameters. It's also possible to ran it on multiple cores by...
