Shruti Paniwala
A Bioinformatician
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BBMap help
By Shruti Paniwala 2965 days ago
https://www.biostarhandbook.com/tools/bbmap/bbmap-help.html
That content has been reformatted and it is being expanded to include more information.
There are common options for most BBMap suite programs and depending on the file extension the input/output format is automatically chosen/set.
Using BBMap
Mapping Nanopore reads
BBMap.sh has a length cap of 6kbp. Reads longer than this will be broken into 6kbp pieces and mapped independently.
More at https://www.biostarhandbook.com/tools/bbmap/bbmap-help.html
