Jit
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pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
By Jit 2166 days ago
https://github.com/PacificBiosciences/pbalign
pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file will be compatible with Quiver if --forQuiver option is specified.
