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  • Consed--A Finishing Package (BAM File Viewer, Assembly Editor, Autofinish, Autoreport, Autoedit,...

Consed--A Finishing Package (BAM File Viewer, Assembly Editor, Autofinish, Autoreport, Autoedit, and Align Reads To Reference Sequence)

http://www.phrap.org/consed/consed.html
  • Supports Illumina, 454, other Next-Gen and Sanger Reads and allows mixtures of these read types
  • Consed includes BamScape which can view bam files with unlimited numbers of reads. BamScape can bring up consed to edit reads and the reference sequence in targeted regions.
  • Consed is compatible with Newbler, Cross_match, Phrap, MIRA, Velvet and PCAP output.
  • Quickly takes the user to each variant site for viewing (also available as an automated report)
  • Overview of assembly can help detect and fix misassemblies
  • Editing time reduced by the program's ability to pin-point problem areas
  • Editing is guided by error probabilities