Neelam Jha
Bioinformatics Beginner
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Consed--A Finishing Package (BAM File Viewer, Assembly Editor, Autofinish, Autoreport, Autoedit, and Align Reads To Reference Sequence)
By Neelam Jha 1541 days ago
http://www.phrap.org/consed/consed.html
- Supports Illumina, 454, other Next-Gen and Sanger Reads and allows mixtures of these read types
- Consed includes BamScape which can view bam files with unlimited numbers of reads. BamScape can bring up consed to edit reads and the reference sequence in targeted regions.
- Consed is compatible with Newbler, Cross_match, Phrap, MIRA, Velvet and PCAP output.
- Quickly takes the user to each variant site for viewing (also available as an automated report)
- Overview of assembly can help detect and fix misassemblies
- Editing time reduced by the program's ability to pin-point problem areas
- Editing is guided by error probabilities
