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  • AlignQC: A tool for assessing an alignment, and generating reports that are easy to share

AlignQC: A tool for assessing an alignment, and generating reports that are easy to share

https://www.healthcare.uiowa.edu/labs/au/AlignQC/

Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser compatible xhtml to visualize/share/store/extract analysis results.

https://f1000research.com/articles/6-100/

https://github.com/jason-weirather/AlignQC