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Versatile genome assembly evaluation with QUAST-LG
By Jit 2162 days ago
http://cab.spbu.ru/software/quast-lg/
QUAST-LG is an extension of QUAST intended for evaluating large-scale genome assemblies (up to mammalian-size).
QUAST-LG is included in the QUAST package starting from version 5.0.0 (download the latest release). Run QUAST as usual and do not forget to add ‐‐large option to your command!
A short list of the new features (see CHANGES for all):
- Significant speedup achieved by both use of new fast aligner (minimap2) and the refactoring of alignment analyzing modules
- New k-mer-based completeness and correctness metrics
- BUSCO added for enhanced reference-free analysis
- The concept of upper bound assembly (theoretical limits on the assembly completeness and contiguity for a given genome and set of reads)
