Jit
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Katuali is a flexible consensus pipeline implemented in Snakemake to basecall, assemble, and polish Oxford Nanopore Technologies' sequencing data
By Jit 1924 days ago
https://github.com/nanoporetech/katuali
- Run a pipeline processing fast5s to a consensus in a single command.
- Recommended fixed "standard" and "fast" pipelines.
- Interchange basecaller, assembler, and consensus components of the pipelines simply by changing the target filepath.
- Seemless distribution of tasks over local or distributed compute.
- Highly configurable.
- Open source (Mozilla Public License 2.0).
Documentation can be found at https://nanoporetech.github.io/katuali/.
