BioStar
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McClintock: Meta-pipeline to identify transposable element insertions using next generation sequencing data
By BioStar 1486 days ago
https://github.com/bergmanlab/mcclintock
an integrated bioinformatics pipeline for the detection of TE insertions in whole-genome shotgun data, called McClintock (https://github.com/bergmanlab/mcclintock), which automatically runs and standardizes output for multiple TE detection methods. We demonstrate the utility of McClintock by evaluating six TE detection methods using simulated and real genome data from the model microbial eukaryote, Saccharomyces cerevisiae.
