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  • GffCompare: Program for processing GTF/GFF files

GffCompare: Program for processing GTF/GFF files

https://ccb.jhu.edu/software/stringtie/gffcompare.shtml

The program gffcompare can be used to compare, merge, annotate and estimate accuracy of one or more GFF files (the “query” files), when compared with a reference annotation (also provided as GFF).