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  • Gepard: allows the calculation of dotplots even for large sequences like chromosomes or bacterial...

Gepard: allows the calculation of dotplots even for large sequences like chromosomes or bacterial genomes

https://github.com/univieCUBE/gepard

Gepard (German: "cheetah", Backronym for "GEnome PAir - Rapid Dotter") allows the calculation of dotplots even for large sequences like chromosomes or bacterial genomes. Reference: Krumsiek J, Arnold R, Rattei T. Gepard: A rapid and sensitive tool for creating dotplots on genome scale. Bioinformatics 2007; 23(8): 1026-8. PMID: 17309896

http://cube.univie.ac.at/gepard