BOL: ShadowCaster: a hybrid approach for the detection of horizontal gene transfer events in prokaryotes

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ShadowCaster: a hybrid approach for the detection of horizontal gene transfer events in prokaryotes

ShadowCaster: a hybrid approach for the detection of horizontal gene transfer events in prokaryotes

By Jit 1383 days ago

ShadowCaster
hybrid
approach
detection
horizontal
gene
transfer
prokaryotes
HGT

ShadowCaster implements an evolutionary model to calculate Bayesian likelihoods for each ‘alien genes’ with an unusual sequence composition according to the host genome background to detect HGT events in prokaryotes.

https://www.mdpi.com/2073-4425/11/7/756/htm

https://shadowcaster.readthedocs.io/en/latest/

https://github.com/dani2s/ShadowCaster_testData

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ShadowCaster: a hybrid approach for the detection of horizontal gene transfer events in prokaryotes