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PLAR: Pipeline for lncRNA annotation from RNA-seq data
By Abhinav 844 days ago
http://www.weizmann.ac.il/Biological_Regulation/IgorUlitsky/PLAR
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), and synteny). One is comparing human GENCODE genes (from GENCODE v30) to lncRNAs from other species identified by PLAR. Available here.
|
Species |
Assembly |
Code |
Transcriptome |
lncRNAs |
Protein-coding |
|
Human |
hg19 |
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|
Rhesus |
rm3 |
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|
Marmoset |
cj3 |
||||
|
Mouse |
mm9 |
||||
|
Rabbit |
oc2 |
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|
Dog |
cf3 |
||||
|
Ferret |
oa3 |
||||
|
Opossum |
md5 |
||||
|
Chicken |
gg4 |
||||
|
Lizard |
ac2 |
||||
|
Coelacanth |
lc1 |
||||
|
Zebrafish |
dr7 |
||||
|
Stickleback |
ga1 |
||||
|
Nile tilapia |
ot2 |
||||
|
Spotted gar |
lo1 |
||||
|
Elephant shark |
cm1 |
||||
|
Sea urchin |
sp4 |
