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Neel on Fix rewritable error of ELGG ! (923 days ago): sudo systemctl restart apache2 Now, create...- Shruti Paniwala on LASTZ (3064 days ago): The latest relase of LastZ at http://www.bx.psu.edu/~rsharris/lastz/newer/
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Genome, Learn, Bioinformatics, Assembly, NGS, data, Pipeline, lineage, Covid, classification, Analysis, Server, pango, Spectrum, cov-spectrum, R, Phylogenetic, sequence, Alignment, ultra, genomes, Computational Biology, Tutorial, Corona, Viruses, SARS-CoV2, Phylogeny, FASTA, BLAST, Variation, Orthologous, Gene, sensitive, book, Reads, fast, Tree, Toolkit, search, DNA, framework, Bactopia, Flexible, Complete, Bacterial, PPT, Online, RNA-Seq, Algorithms, Rosalind
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Abhi's bookmarks
Bioinformatics Workshops !
By Abhi 125 days agoevomics.org - When delving into bioinformatics, having access to reliable resources is crucial for effective research and analysis. Key online resources include the National Center for Biotechnology Information (NCBI), which offers tools like BLAST for sequence...Variant Calling Resequencing-Based Genome Inference
By Abhi 125 days agoevomics.org - Variant Calling - Resequencing-Based Genome Inference Erik GarrisonUniversity of Tennessee Health Science CenterWorkshop on Genomics - Český KrumlovJanuary 12,...DIY Transcriptomics
By Abhi 125 days agodiytranscriptomics.com - A semester-long course covering best practices for the analysis of high-throughput sequencing data from gene expression (RNA-seq) studies, with a primary focus on empowering students to be independent in the use of lightweight and open-source...Bactopia: a flexible pipeline for complete analysis of bacterial genomes
By Abhi 178 days agobactopia.github.io - Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is process your data with a broad set of tools, so that you can get to the fun part of analyses quicker! Bactopia was inspired by Staphopia, a...MetaGraph: Ultra Scalable Framework for DNA Search, Alignment, Assembly
By Abhi 178 days agometagraph.ethz.ch - The MetaGraph framework is designed to work with a wide range of input data sets, indexing from a few samples up to the contents of entire archives with hundreds of thousands of records. The indexing workflow always follows the same principle,...Fundamentals of Data Visualization by Claus O. Wilke
By Abhi 178 days agoclauswilke.com - The book is meant as a guide to making visualizations that accurately reflect the data, tell a story, and look professional. It has grown out of my experience of working with students and postdocs in my laboratory on thousands of data...ULTRA (ULTRA Locates Tandemly Repetitive Areas) : Effective Labeling of Repetitive Genomic Sequence
By Abhi 178 days agogithub.com - ULTRA is a tool to find and annotate tandem repeats inside genomic sequence. It is able to find repeats of any length and of any period (up to a maximum period of 4000). It can find highly decayed repeats missed by other software, and it will also...quarTeT: a telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat...
By Abhi 178 days agowww.atcgn.com - quarTeT is a collection of tools for T2T genome assembly and basic analysis in automatic workflow.Task include: AssemblyMapper : reference-guided genome assembly GapFiller : long-reads based gap filling TeloExplorer : telomere...Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes
By Abhi 202 days agogithub.com - Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is to process your data with a broad set of tools, so that you can get to the fun part of analyses quicker! Bactopia can be split into two main...The ATCC Genome Portal
By Abhi 202 days agohttps://genomes.atcc.org/ - The ATCC Genome Portal (AGP, https://genomes.atcc.org/) is a database of authenticated genomes for bacteria, fungi, protists, and viruses held in ATCC’s biorepository. It now includes 3,938 assemblies (253% increase) produced under ISO...
