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Python Everywhere

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Rahul Agarwal 4622 days ago
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  • Using Interval Trees to Query Genome Annotations by Position

    Using Interval Trees to Query Genome Annotations by Position

    Revision created 4219 days ago by Rahul Agarwal

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Using Interval Trees to Query Genome Annotations by Position: Revision

Using Interval Trees to Query Genome Annotations by Position

Using Interval Trees to Query Genome Annotations by Position

Last updated 4219 days ago by Rahul Agarwal
  • genome overlapping features
  • BED files
  • IntervalTrees

To work on query related to overlapping genomic features: use IntervalTree python pkg

http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-by-position/

http://hackmap.blogspot.de/2008/11/python-interval-tree.html

http://en.wikipedia.org/wiki/Interval_tree#Construction

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