Jit
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HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
By Rahul Nayak 2393 days agogithub.com - HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single reference genome). Based on an extension of BWT for...Heatmapper: web-enabled heat mapping for all
By Jit 2247 days agowww2.heatmapper.ca - Heatmapper is a freely available web server that allows users to interactively visualize their data in the form of heat maps through an easy-to-use graphical interface. Heatmapper is a versatile tool that allows users to easily create a wide variety...BlasR Mapping single molecule sequencing reads using Basic Local Alignment with Successive...
By Jit 2378 days agobix.ucsd.edu - BLASR (Basic Local Alignment with Successive Refinement) for mapping Single Molecule Sequencing (SMS) reads that are thousands to tens of thousands of bases long with divergence between the read and genome dominated by insertion and deletion...FUMA GWAS: Functional Mapping and Annotation of Genome-Wide Association Studies
By Jit 2004 days agohttps://fuma.ctglab.nl/ - FUMA is a platform that can be used to annotate, prioritize, visualize and interpret GWAS results. The SNP2GENE function takes GWAS summary statistics as an input, and provides extensive functional annotation for all SNPs in genomic...Molecular Genetics Lecture
By Rahul Agarwal 4077 days agowww.youtube.com - "Robert Sapolsky makes interdisciplinary connections between behavioral biology and molecular genetic influences. He relates protein synthesis and point mutations to microevolutionary change, and discusses conflicting theories of gradualism and...Memories Can Be Passed Down Through DNA
By Radha Agarkar 3851 days agoThe premise of Assassin's Creed is the reliving of other people's memories stored inside DNA. Well scientists have found that in mice, it actually happens! Anthony is joined by special guest and our friend Tara Long from Hard Science to explain how...%MinMax: A versatile tool for calculating and comparing synonymous codon usage and its impact on...
By Surabhi Chaudhary 2377 days agohttp://www.codons.org/ - %MM calculates whether a given gene sequence encodes amino acids using the most common codons possible, the least common codons possible, or (most typically) some combination of these extremes. See our PLoS ONE paper for more details on how the...KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
By Jit 2229 days agokobas.cbi.pku.edu.cn - KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module) and functional gene set enrichment(Enrichment module). For Annotate module, it accepts gene list as input, including IDs or sequences, and generates annotations...A History of Bioinformatics (in the Year 2039)
By Martin Jones 3778 days agoC. Titus Brown http://video.open-bio.org/video/1/a-history-of-bioinformatics-in-the-year-2039Caretta – A multiple protein structure alignment and feature extraction suite
By Rahul Nayak 1438 days agowww.bioinformatics.nl - Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments...
