cloud.google.com - Explore genetic variation interactively. Compare entire cohorts in seconds with SQL-like queries. Compute transition/transversion ratios, genome-wide association, allelic frequency and more.
Process big genomic data easily. Run batch analyses...
milkweedgenome.org - Some of the useful bioinformatics scripts.
For example ... contig-stats.pl is a Perl script that will automatically describe features of a sequence assembly.
http://milkweedgenome.org/?q=scripts
R is a functional based language, the inputs to a function, including options, are in brackets. Note that all dat and options are separated by a comma
Function(data, options)
Even quit is a function
q()
So is...
Perl has a ton of command line switches (see perldoc perlrun), but I'm just going to cover the ones you'll commonly need to debug code. The most important switch is -e, for execute (or maybe "engage" :) ). The -e switch takes a quoted string of Perl...
Our research group is primarily focused on the analysis of whole genome sequence data to identify genetic variation (primarily structural variation) and examine their potential functional impact in disease phenotypes. We are particularly interested...
Solved with perl http://rosalind.info/problems/1a/
#Find the most frequent k-mers in a string.#Given: A DNA string Text and an integer k.#Return: All most frequent k-mers in Text (in any order).use strict;use warnings;my...