Jitendra Narayan
BioinformaticsOnline(BOL) admin
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- BioStar on Perl Module Installation (414 days ago): To install BioPerl on a macOS system, you can follow these steps: Open the...
- Shruti Paniwala on List of Bioinformatics Vacancy, Jobs, Opportunity websites (1032 days ago): Bioinformatics jobs at https://jobrxiv.org/?search_keywords=bioinformatics
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- Neelam Jha on List of Bioinformatics Vacancy, Jobs, Opportunity websites (1220 days ago): Bioinformatics jobs at https://www.invitae.com/en/careers/search
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Jitendra Narayan's bookmarks
Understanding PacBio
By Jitendra Narayan 2619 days agogithub.com - This tutorial includes resources for learning more about PacBio data and bioinformatics analysis, and includes content suitable for both beginners and experts. Below are links to training modules (webinars and PowerPoint presentations) to help you...AccNET
By Jitendra Narayan 2759 days agosourceforge.net - AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organisms. Using the proteomes of these organisms, AccNET create a bipartite network compatible with common network analysis platforms. AccNET...4DGenome
By Jitendra Narayan 2854 days ago4dgenome.research.chop.edu - Records in 4DGenome are compiled through comprehensive literature curation of experimentally-derived and computationally-predicted interactions. The current release contains 4,433,071 experimentally-derived and 3,605,176 computationally-predicted...Microscope
By Jitendra Narayan 2976 days agomicroscope.readthedocs.org - Microscope Platform user documentation. The MicroScope platform is available at this URL: https://www.genoscope.cns.fr/agc/microscopeBreakSeq2
By Jitendra Narayan 2979 days agobioinform.github.io - Ultrafast and accurate nucleotide-resolution analysis of structural variants More at http://bioinform.github.io/breakseq2/ Download BreakSeq2 Latest version: https://github.com/bioinform/breakseq2/archive/2.2.tar.gzFor other versions, see...Ensembl comparative genomics resources
By Jitendra Narayan 2980 days agowww.ncbi.nlm.nih.gov - The Ensembl comparative genomics resources are one such reference set that facilitates comprehensive and reproducible analysis of chordate genome data. Ensembl computes pairwise and multiple whole-genome alignments from which large-scale synteny,...Stacks
By Jitendra Narayan 2984 days agocatchenlab.life.illinois.edu - Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps...flo
By Jitendra Narayan 2999 days agogithub.com - flo - same species annotations lift over pipeline Lift over is the process of transferring annotations from one genome assembly to another. Usually lift over is done because there is a new, improved genome assembly for the species and good quality...Spines
By Jitendra Narayan 3000 days agowww.broadinstitute.org - Spines Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data structures for efficient data manipulation (mostly genomic sequences, alignments,...CrossMap
By Jitendra Narayan 3000 days agocrossmap.sourceforge.net - CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly...
