Jitendra Narayan
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The "Ifs" and "Buts" of NGS Quality Control and Trimming
By BioStar 528 days agoNGS quality control and trimming are essential steps to ensure reliable and accurate data for analysis. While the "ifs" highlight the clear benefits of these steps, the "buts" remind us of the potential pitfalls. By adopting best practices and...VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules
By Rahul Nayak 2811 days agogithub.com - VariantBam is a tool to extract/count specific sets of sequencing reads from next-generational sequencing files. To save money, disk space and I/O, one may not want to store an entire BAM on disk. In many cases, it would be more efficient to store...jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
By Abhimanyu Singh 2516 days agogithub.com - jackalope simply and efficiently simulates (i) variants from reference genomes and (ii) reads from both Illumina and Pacific Biosciences (PacBio) platforms. It can either read reference genomes from FASTA files or simulate new ones. Genomic variants...genomics public data links !
By Jit 2314 days agoconsole.cloud.google.com - List of publically available databases on google server. More at https://software.broadinstitute.org/gatk/download/bundle ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/VCF/GATK/. ftp://ftp.broadinstitute.org/bundle/hg38/hg38bundle/List of cancer genomics research web resources !
By biogeek 3091 days agoMajor web resources for cancer genomics researchFinding a mimicry game for teaching on-line and mentioned general resources
By Shruti Paniwala 1448 days agofinding a mimicry game for teaching on-line and mentioned general resourcesProject Fellow Positions at CSIR-IHBT Palampur
Category: opportunity:Jobs
Salary: Rs.12,000/- P.M. Rs.14,000/- P.M. as per the funds provisions in the respective projects.
Condition: New
By Nitesh 3849 days agoWalk-in-Interview is scheduled to be held on the date as mentioned below for selection of Suitable candidates in the following areas under the different Sponsored/CSIR Networked Projects on purely temporary basis for the duration of the project(s)...JRF Bioinformatics at National Chemical Laboratory
Junior Project Fellow Bioinformatics Eligibility : ME/M.Tech, MSc(Bio-Informatics) Location : Pune Last Date : 08 Jan 2016 Hiring Process : Written-test, Face to Face Interview National Chemical Laboratory Junior Project Fellow Jobs...Hoffman Lab
They develop machine learning techniques to better understand chromatin biology. These models and algorithms transform high-dimensional functional genomics data into interpretable patterns and lead to new biological...flo
By Jitendra Narayan 3778 days agogithub.com - flo - same species annotations lift over pipeline Lift over is the process of transferring annotations from one genome assembly to another. Usually lift over is done because there is a new, improved genome assembly for the species and good quality...
