Surabhi Chaudhary
A Bioinformatician
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Useful Publications and Websites for Deep Sequencing Data Analysis
Last updated 3983 days ago by Rahul NayakGlobal overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant to animal and microbial systems] Sense from sequence reads: methods for...RNA-seq Analysis Workshop Course Materials
By Jit 2336 days agochagall.med.cornell.edu - RNAseq can be roughly divided into two "types": Reference genome-based - an assembled genome exists for a species for which an RNAseq experiment is performed. It allows reads to be aligned against the reference genome and significantly improves...Managing and Analyzing Next-Generation Sequence Data
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Perl one-liner for bioinformatician !!!
Last updated 3832 days ago by Abhimanyu Singh Comments (3)With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized" file formats (FASTQ, SAM, VCF, etc.) and some tools for manipulating... Bioinformatics algorithms tutorials
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By Jitendra Narayan 3196 days agocatchenlab.life.illinois.edu - Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps...
