Priya Singh
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Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
By Rahul Nayak 2697 days agosourceforge.net - Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like...A History of Bioinformatics (in the Year 2039)
By Martin Jones 4246 days agoC. Titus Brown http://video.open-bio.org/video/1/a-history-of-bioinformatics-in-the-year-2039Flye: Fast and accurate de novo assembler for single molecule sequencing reads
By Rahul Nayak 2437 days agogithub.com - Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The...Scientists map 17,294 proteins produced in human body
By Jit 4301 days ago17,294 proteins mapped in 30 organs of human bodyDeepbinner: a signal-level demultiplexer for Oxford Nanopore reads
By Jit 2218 days agogithub.com - Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful in image classification. Unlike...SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
By BioStar 2029 days agogithub.com - SHAMAN is a shiny application for differential analysis of metagenomic data (16S, 18S, 23S, 28S, ITS and WGS) including bioinformatics treatment of raw reads for targeted metagenomics, statistical analysis and results visualization with a large...Genomics and Personalized Medicine
By Rahul Nayak 4297 days ago(October 20, 2009) Michael Snyder, Professor of Genetics and Chair of the Department of Genetics at Stanford, discusses advances in gene sequencing, the impact of genomics on medicine, the potential for personalized medicine. and efforts at Stanford...FastProNGS: fast preprocessing of next-generation sequencing reads
By Rahul Nayak 1898 days agogithub.com - FastProNGS to integrate the quality control process with automatic adapter removal. Parallel processing was implemented to speed up the process by allocating multiple threads. Compared with similar up-to-date preprocessing tools, FastProNGS is by...Adhoc Bioinformatics Faculty Position @ NIT
NATIONAL INSTITUTE OF TECHNOLOGY, DEPARTMENT OF BIOTECHNOLOGY, WARANGAL – 506 021, Andhra Pradesh No.NITW/BT/2014/adhoc APPLICATIONS ARE INVITED FOR THE APPOINTMENT OF ADHOC FACULTY ON CONTRACT BASIS IN THE DEAPARTMENT OF...Understanding kmer !
By BioStar 1663 days agobioinfologics.github.io - What is a k-mer anyway? A k-mer is just a sequence of k characters in a string (or nucleotides in a DNA sequence). Now, it is important to remember that to get all k-mers from a sequence you need to get...
