Abhimanyu Singh
A bioinformatics beginner
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LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data
By Neel 1817 days ago Comments (1)academic.oup.com - LoReTTA (Long Read Template-Targeted Assembler), a tool designed for performing de novo assembly of long reads generated from viral genomes on the PacBio platform. LoReTTA exploits a reference genome to guide the assembly process, an approach that...bipype
By Jit 3482 days agoreadthedocs.org - Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input options: amplicons, WGS (whole genome sequences) and metatranscriptomic data. If amplicons are input data, then bipype does...ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data
By LEGE 767 days agogithub.com - ContigExtender, was developed to extend contigs, complementing de novo assembly. ContigExtender employs a novel recursive Overlap Layout Candidates (r-OLC) strategy that explores multiple extending paths to achieve longer and highly accurate...MIKE: an ultrafast, assembly-, and alignment-free approach for phylogenetic tree construction
By Abhi 797 days agogithub.com - MIKE (MinHash-based k-mer algorithm). This algorithm is designed for the swift calculation of the Jaccard coefficient directly from raw sequencing reads and enables the construction of phylogenetic trees based on the resultant Jaccard...16th Congress of the European Society for Evolutionary Biology (ESEB)
Abstract submissions for our upcoming symposium on the Genomics of Adaptation that will take place as part of the 16th Congress of the European Society for Evolutionary Biology (ESEB). The conference will take place from August 20th - August 25th,...GenomeRing: alignment visualization based on SuperGenome coordinates
By Neel 3434 days ago Comments (1)it.informatik.uni-tuebingen.de - The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often based on whole-genome alignments to elucidate structural differences arising from insertions,...Studentship
Advt. No. ACBR/BTBI/BIF/Manpower/ADV/16-17 Research Associate/ Studentship/ Traineeship Jobs opportunity in University of Delhi - Dr. B.R. Ambedkar Center for Biomedical Research (ACBR) on temporary basis Studentship No. of Post :...Many-Core Engine (MCE) for Perl example
By Jit 3421 days agogithub.com - MCE spawns a pool of workers and therefore does not fork a new process per each element of data. Instead, MCE follows a bank queuing model. Imagine the line being the data and bank-tellers the parallel workers. MCE enhances that model by adding the...Open Positions in Pasini’s lab
Computational Biologists Open to PhD-student and Post-doc candidates We are looking for wet and computational biologists to work on an ERC funded project in our laboratory located at the Department of Experimental Oncology of the European...
