Abhimanyu Singh
A bioinformatics beginner
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Research Officer at National Tea Research Foundation
National Tea Research Foundation (NTRF) a registered body, requires qualified and experienced agricultural research scientist for contractual appointment as per details below : Post Research Officer, NTRF, Kolkata Essential Post Graduate...GraphUnzip: Phases an assembly graph using Hi-C data and/or long reads.
By Jit 2069 days agogithub.com - GraphUnzip, a fast, memory-efficient and accurate tool to unzip assembly graphs into their constituent haplotypes using long reads and/or Hi-C data. As GraphUnzip only connects sequences in the assembly graph that already had a potential link based...Spines
By Jit 3599 days agowww.broadinstitute.org - Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data structures for efficient data manipulation (mostly genomic sequences, alignments, variation...LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data
By Neel 1931 days ago Comments (1)academic.oup.com - LoReTTA (Long Read Template-Targeted Assembler), a tool designed for performing de novo assembly of long reads generated from viral genomes on the PacBio platform. LoReTTA exploits a reference genome to guide the assembly process, an approach that...bipype
By Jit 3596 days agoreadthedocs.org - Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input options: amplicons, WGS (whole genome sequences) and metatranscriptomic data. If amplicons are input data, then bipype does...ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data
By LEGE 881 days agogithub.com - ContigExtender, was developed to extend contigs, complementing de novo assembly. ContigExtender employs a novel recursive Overlap Layout Candidates (r-OLC) strategy that explores multiple extending paths to achieve longer and highly accurate...MIKE: an ultrafast, assembly-, and alignment-free approach for phylogenetic tree construction
By Abhi 911 days agogithub.com - MIKE (MinHash-based k-mer algorithm). This algorithm is designed for the swift calculation of the Jaccard coefficient directly from raw sequencing reads and enables the construction of phylogenetic trees based on the resultant Jaccard...16th Congress of the European Society for Evolutionary Biology (ESEB)
Abstract submissions for our upcoming symposium on the Genomics of Adaptation that will take place as part of the 16th Congress of the European Society for Evolutionary Biology (ESEB). The conference will take place from August 20th - August 25th,...GenomeRing: alignment visualization based on SuperGenome coordinates
By Neel 3548 days ago Comments (1)it.informatik.uni-tuebingen.de - The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often based on whole-genome alignments to elucidate structural differences arising from insertions,...
