Jit
Enthusiast computational biologist with business dream !!!
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Orione – a web-based framework for NGS analysis in microbiology
By Martin Jones 4335 days agohttp://orione.crs4.it/ - End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, the construction of computational pipelines that...JCVI:Python utility libraries on genome assembly, annotation and comparative genomics
By Jit 2271 days agogithub.com - Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics. https://github.com/tanghaibao/jcvi More at https://github.com/tanghaibao/jcvi/wikiAssistant Professor in Bioinformatics at Indian Institute of Technology Delhi
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By Reshma Khatun 4250 days agocloud.google.com - Google Genomics provides an API to store, process, explore, and share DNA sequence reads, reference-based alignments, and variant calls, using Google's cloud infrastructure. Store alignments and variant calls for one genome or a million. Process...LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
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By Tenzin Paul 4187 days agocloud.google.com - Explore genetic variation interactively. Compare entire cohorts in seconds with SQL-like queries. Compute transition/transversion ratios, genome-wide association, allelic frequency and more. Process big genomic data easily. Run batch analyses...
