Jit
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rHAT: a seed-and-extension-based noisy long read alignment tool
By Abhimanyu Singh 2725 days agogithub.com - rHAT is a seed-and-extension-based noisy long read alignment tool. It is suitable for aligning 3rd generation sequencing reads which are in large read length with relatively high error rate, especially Pacbio's Single Molecule Read-time (SMRT)...sequenceserver
By Jit 3287 days agogithub.com - SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user interface for use locally or over the web. More at http://sequenceserver.com.Caretta – A multiple protein structure alignment and feature extraction suite
By Rahul Nayak 1908 days agowww.bioinformatics.nl - Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments...LoRDEC: a hybrid error correction program for long, PacBio reads
By Jit 3256 days agowww.atgc-montpellier.fr - LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hybrid strategy, meaning that it uses two sets of reads: the reference read...DeCoSTAR - Detection of Co-evolution
By Jit 3252 days agopbil.univ-lyon1.fr - DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of sets of neighborhood relations -adjacencies- between pairs of ancestral genes or gene domains.Ancestral genes or domains are deduced from...Five unique traits of effective computational biologist
By Jitendra Narayan 4624 days ago Comments (3)Traits of biological programmersRA Bioinformatics at JNU, New Delhi, INDIA
School of Computational & Integrative Sciences Jawaharlal Nehru University New Delhi-110067, INDIA Date: April 24th. 2017 Last Date: May 6th 2017 PROJECT ID: 632 The following posts are urgently required to be filled for the Department...The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @...Tetra-Nucleotide Analysis
By Jit 3232 days agochunlab.wordpress.com - A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride et al. (2003) showed that the frequency of tetra-nucleotides in bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though...
