Jit
Enthusiast computational biologist with business dream !!!
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MUMmer4: A fast and versatile genome alignment system
By Jit 2486 days agomummer4.github.io - MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing the 32-bit suffix tree data structure at the core of MUMmer to a 48-bit suffix array, and that offers improved speed through parallel processing...Roslin Bioinformatics Group
Roslin Bioinformatics Group The Law group provides internal Institute-specific development, training and support roles for data manipulation, sequence analysis and any other aspect of the analysis of biological data using computer systems....AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
By Manisha Mishra 2413 days agogithub.com - AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using AlignGraph AlignGraph --read1 reads_1.fa --read2 reads_2.fa --contig contigs.fa...PhD at University of Calgary
Institution/Company: University of Calgary Location: Calgary, AB Job Description: Novel diagnostic platform for detection of Osteoarthritis I invite applications from highly motivated individuals to join my laboratory as a PhD student...CrossMap: a program for convenient conversion of genome coordinates
By Jit 2369 days agocrossmap.sourceforge.net - CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly...Postdoc positions in computational biology - Center for Genomic Science - Milan, Italy
Job Description: three postdoc positions in computational biology are available at the Center for Genomic Science in Milan (Italy): - Development of computational methods to investigate the interplay between epigenetic and genetic layers and...assemblytics: delta file to analyze alignments of an assembly to another assembly or a reference...
By Jit 2355 days agohttp://assemblytics.com/ - Download and install MUMmer Align your assembly to a reference genome using nucmer (from MUMmer package) $ nucmer -maxmatch -l 100 -c 500 REFERENCE.fa ASSEMBLY.fa -prefix OUT Consult the MUMmer manual if you encounter problems Optional: Gzip...EMBO practical Course on "Bioinformatics and Genomes Analyses" at Hellenic Pasteur Institute,...
The main objectives of this Practical Course are to strengthen skills of PhD students and young researchers in the domain of Bioinformatics and Genome Data Analyses on the use of advanced fundamental algorithms and their applications in genome...
LINKS scaffolder bloomfilter setting !
Last updated 2354 days ago by Jit➜ bin git:(master) ✗ ls -l total 68 drwxrwxr-x 3 urbe urbe 4096 Jun 15 12:15 lib -rwxrwxrwx 1 urbe urbe 65141 Jun 15 17:13 LINKS ➜ bin git:(master) ✗ pwd /home/urbe/Tools/LINKS_1.8.6/bin ➜ bloomfilter git:(master) ✗ swig -Wall -c++...Oldest Hominin DNA Sequenced
By Surajeet 3985 days agoMitochondrial Genome of a 400,000-Year-Old Hominin from Spain Decoded
