Jit
Enthusiast computational biologist with business dream !!!
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RA Bioinformatics at School of Computational & Integrative Sciences, JNU, India
School of Computational & Integrative Sciences Jawaharlal Nehru University New Delhi – 110067 Date: Nov 11th. 2016 Last Date: Nov 25th. 2016 PROJECT ID: 632 The following...Illumina based assembly pipeline steps !
By Surabhi Chaudhary 1123 days agoGenome assembly pipeline !Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation
By Neel 1008 days agogithub.com - Merfin, a k-mer based variant-filtering algorithm for improved accuracy in genotyping and genome assembly polishing. Merfin evaluates each variant based on the expected k-mer multiplicity in the reads, independently of the quality of the...MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
By Abhi 489 days agogithub.com - MitoHiFi v3.2 is a python pipeline distributed under MIT License ! MitoHiFi was first developed to assemble the mitogenomes for a wide range of species in the Darwin Tree of Life Project...Gene Synteny Database
By Jit 2943 days agowww.ncbi.nlm.nih.gov - Comparative genomics remains a pivotal strategy to study the evolution of gene organization, and this primacy is reinforced by the growing number of full genome sequences available in public repositories. Despite this growth, bioinformatic tools...MEME suite
By Bulbul 2936 days agohttp://meme-suite.org/ - Motif based sequence analysis suits The MEME Suite allows the biologist to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to perform a wide variety of other motif-based analyses. The MEME Suite...Ideoplot
By Shruti Paniwala 2884 days agogithub.com - Simple ideogram plotting and annotation in R. Basic usage: Rscript Ideoplot.R --heatmap hm.bed --annotate annotations.bed --out ideogram.pdf -or- Rscript Ideoplot.R --annotate annotations.bed Options --ideobed, i A bed file of reference...Laj: viewing and manipulating the output from pairwise alignment programs
By Abhimanyu Singh 2868 days agowww.bx.psu.edu - Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and text representations of the alignments, a diagram showing the locations of exons and repeats, and...
