Jit
Enthusiast computational biologist with business dream !!!
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Shendure Lab
The Shendure Lab is part of the Department of Genome Sciences at the University of Washington (Seattle, WA). The mission of the lab is to develop and apply new technologies in genomics and molecular biology. Most projects in the lab exploit new DNA...GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
By Abhimanyu Singh 3309 days agogithub.com - GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using diverse information sources. GRASS offers a mixed-integer programming formulation of the contig scaffolding problem, which...Shankar Lab
Research Interest: (A) Regulatory System Analysis with respect to microRNAs (B) Computational Epigenomics & Regulomics: (C) Computational issues with Next Generation Sequencing: Department of Biotechnology, Institute of Himalyan...DbBrowser: Attwood Lab
DbBrowser: Attwood Lab research concerns protein sequence analysis, primarily using the method of protein 'fingerprinting'. DbBrowser: Attwood Lab maintain a diagnostic fingerprint database (PRINTS), one of the founding partner of InterPro. We also...pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
By Jit 2943 days agogithub.com - pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file...Bioinformatics @ TATA MEMORIAL CENTRE, NAVI MUMBAI
TATA MEMORIAL CENTRE ADVANCED CENTRE FOR TREATMENT, RESEARCH AND EDUCATION IN CANCER KHARGHAR, NAVI MUMBAI – 410210 No. ACTREC/Advt./ 72 /2013 WALK IN INTERVIEW 1. JRF* Genome-wide RNAi screen with human pooled tyrosine kinase shRNA...Project Junior Research Fellow @ CCMB
Temporary Project positions available purely on temporary basis - Oct/2013 1. Project Junior Research Fellow / Project Assistant Last Date: 11th Nov 2013 Qualification B.Tech (Comp. Sci.), B.Tech/M.Tech (Bioinformatics), MCA, M.Sc....AlignQC: A tool for assessing an alignment, and generating reports that are easy to share
By Jit 2868 days agowww.healthcare.uiowa.edu - Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser...Edwards Lab
We study the evolutionary biology of birds and relatives, combining field, museum and genomics approaches to understand the basis of avian diversity, evolution and behavior. Our guiding approaches include population genetics, which provides a...
