Poonam Mahapatra
Bioinformatics Researcher
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COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
By Jit 2546 days agoftp.genomics.org.cn - An efficient tool called Connecting Overlapped Pair-End (COPE) reads, to connect overlapping pair-end reads using k-mer frequencies. We evaluated our tool on 30× simulated pair-end reads from Arabidopsis thaliana with 1% base error. COPE...Project Junior Research Fellow @ CCMB
Temporary Project positions available purely on temporary basis - Oct/2013 1. Project Junior Research Fellow / Project Assistant Last Date: 11th Nov 2013 Qualification B.Tech (Comp. Sci.), B.Tech/M.Tech (Bioinformatics), MCA, M.Sc....Mash: fast genome and metagenome distance estimation using MinHash
By Jit 2539 days agogithub.com - Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for other operating systems or for development. Mash requires c++11 to build, which is...Edwards Lab
We study the evolutionary biology of birds and relatives, combining field, museum and genomics approaches to understand the basis of avian diversity, evolution and behavior. Our guiding approaches include population genetics, which provides a...Ai-CADD Project @ Kerela University
Applications are invited for the following Positions in the AiCADD project funded by MHRD Govt of India Last Date for Submitting Application: 25th November 2013 1. Senior Scientist: (01 position) Pay Scale: Rs.40, 000/- Qualifications: PhD/...G-compass: a comparative genome browser
By Jit 2419 days agowww.h-invitational.jp - G-compass (http://www.h-invitational.jp/g-compass/) is a comparative genome browser. It visualizes evolutionarily conserved genomic regions between human and other 12 vertebrates based on original genome alignments pursuing higher coverage (1,2)....Scientist-B @ VECTOR CONTROL RESEARCH CENTRE
VECTOR CONTROL RESEARCH CENTRE (Indian Council of Medical Research) Indira Nagar Medical Complex Puducherry-605006 WALK-IN-INTERVIEW The following vacancies shall be filled purely on adhoc basis under Non-Institutional adhoc project...Circlator: automated circularization of genome assemblies using long sequencing reads
By Poonam Mahapatra 2386 days agosanger-pathogens.github.io - A tool to circularize genome assemblies. The algorithm and benchmarks are described in the Genome Biology manuscript. Citation: "Circlator: automated circularization of genome assemblies using long sequencing reads", Hunt et al, Genome Biology...Roslin Bioinformatics Group
Roslin Bioinformatics Group The Law group provides internal Institute-specific development, training and support roles for data manipulation, sequence analysis and any other aspect of the analysis of biological data using computer systems....PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
By Surabhi Chaudhary 2359 days agoderisilab.ucsf.edu - We are pleased to release PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++. Its name describes the strategy that it implements for genome assembly: PRICE uses paired-read information to iteratively...
