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Tools for Searching Repeats And Palindromic Sequences
Last updated 3037 days ago by Poonam Mahapatra Comments (2)What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later...Cytoscape
By Anjana 3730 days agohttp://www.cytoscape.org/ - Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network...RA at UNIVERSITY OF HYDERABAD
UNIVERSITY OF HYDERABAD School of Life Sciences Department of Animal Biology Applications are invited on a plane paper (along with copies of educational qualifications and experience) from eligible candidates for the selection of following...HistoneDB 2.0 – with variants
By Anjana 3718 days agowww.ncbi.nlm.nih.gov - This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand how sequence variation may affect functional and structural features of...Blobsplorer
By Jit 3707 days agonematodes.org - Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous display of GC content, coverage, and taxonomic annotation for...DarkHorse
By Jit 3699 days agodarkhorse.ucsd.edu - DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selecting potential ortholog matches from a reference database of amino acid...-
Cheatsheet for Linux !!
Last updated 3699 days ago by JitLinux Commands Cheat Sheet File System ls — list items in current directory ls -l — list items in current directory and show in long format to see perimissions, size, an modification... CSBB-v1.0
By Neel 3692 days agogithub.com - CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R and python in background for specific modules....BINC exam preparation tips !!
By Jit 3676 days agoThese are just a scant few of the common questions asked by bioinformatics students as they ready themselves for the next exam sittingFind predicted CRISPR sites using Ensembl
By Jit 3665 days agoCas9 restricts DNA at specific Protospacer Adjacent Motifs (PAMs), which is species-dependent (for example, 5′ NGG 3′ for Streptococcus pyogenes Cas9).
