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FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
By Jit 2909 days agogithub.com - Here is the command to run the tool: python finisherSC.py destinedFolder mummerPath If you are running on server computer and would like to use multiple threads, then the following commands can generate 20 threads to run FinisherSC. python...JRF/SRF at Jawaharlal Nehru Institute ofAdvanced Studies (JNIAS), Hyderabad
Applications for Academic Projects in Biotechnology, Bioinformatics, Environmental Sciences and Computer Science & Engineering About JNIAS Jawaharlal Nehru Institute of Advanced Studies (JNIAS), Hyderabad has been established by Dr. D....LRCstats: a tool for evaluating long reads correction methods
By Aaryan Lokwani 2907 days agogithub.com - LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produced by Pacific Biosciences. The reads produced by third generation...Google Genomics
By Reshma Khatun 4312 days agocloud.google.com - Google Genomics provides an API to store, process, explore, and share DNA sequence reads, reference-based alignments, and variant calls, using Google's cloud infrastructure. Store alignments and variant calls for one genome or a million. Process...PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the...
By BioStar 2877 days agogithub.com - Development packages for zlib and libbz2 are needed, as well as a standard compiler environment. On Ubuntu, this can be installed via: sudo apt-get install build-essential libtool automake zlib1g-dev libbz2-dev pkg-config On MacOS, the Apple...Research Scientist – National Institute of Cholera and Enteric Diseases
The following post is to be filled up on purely temporary basis under the project entitled "Second phase of Task Force Biomedical Informatics Center of ICMR" under Dr. Santasabuj Das, Scientist 'D' of this Institute:- 01. Scientist II...ARCS: scaffolding genome drafts with linked reads
By Jit 2790 days agogithub.com - ARCS requires two input files: Draft assembly fasta file Interleaved linked reads file (Barcode sequence expected in the BX tag of the read header or in the form "@readname_barcode" ; Run Long Ranger basic on raw chromium reads to...Celebrating Crystallography - An animated adventure
By Jitendra Narayan 4298 days agoNEW: Now with French or Spanish subtitles (click on the 'Captions' icon to select). Plus... Watch the French language version here: https://www.youtube.com/watch?v=PvLu7BOsJhM X-ray crystallography is arguably one of the greatest innovations of the...Flye: Fast and accurate de novo assembler for single molecule sequencing reads
By Rahul Nayak 2589 days agogithub.com - Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The...Postdoctoral fellowship in Bioinformatics
A two-year post-doctoral position is available in the Biocomputing group of the Sapienza University led by Anna Tramontano to work on either genomics research or structural bioinformatics, focusing on the study of relevant biomedical problems. The...
