Jit
Enthusiast computational biologist with business dream !!!
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Hercules: a profile HMM-based hybrid error correction algorithm for long reads
By Jit 2907 days agogithub.com - Choosing whether to use second or third generation sequencing platforms can lead to trade-offs between accuracy and read length. Several studies require long and accurate reads including de novo assembly, fusion and structural variation detection....Project Assistant BioInformatics
Project Assistant BioInformatics Eligibility : ME/M.Tech(Bio-Informatics/Bio-Chemistry Engg), MSc(Bio-Informatics), BE/B.Tech Location : Pune Last Date : 16 Nov 2015 Hiring Process : Face to Face Interview No. Bio/NCIM/3...Rebaler: program for conducting reference-based assemblies using long reads.
By Jit 2878 days agogithub.com - Rebaler is a program for conducting reference-based assemblies using long reads. It relies mainly on minimap2 for alignment and Racon for making consensus sequences. I made Rebaler for bacterial genomes (specifically for the...Pre- or postdoctoral research fellowship in Structural Bioinformatics at Padova
A research fellowship for a software developer is available at the BioComputing UP Laboratory, University of Padova (URL: http://protein.bio.unipd.it/). A highly motivated and creative candidate is sought to work on structural bioinformatics....Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
By Neel 2808 days agogithub.com - Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful...NextDenovo: string graph-based de novo assembler for TGS long reads
By Jit 2404 days agogithub.com - NextDenovo is a string graph-based de novo assembler for TGS long reads. It uses a "correct-then-assemble" strategy similar to canu, but requires significantly less computing resources and storages. After assembly, the per-base error rate...Traineeship at Biomedical Informatics Centre PGIMER Chandigarh
Biomedical Informatics Centre PGIMER Chandigarh invites application for a project dissertation program for students who have completed their first year of M.Sc. in Bioinformatics. This is an exciting opportunity for Master's students to...Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
By Jit 2368 days agogithub.com - Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful in image classification. Unlike...RA Bioinformatics at Jamia Hamdard
Research Associate, Bioinformatics Facility Jamia Hamdard - New Delhi, Delhi Research Associate, Bioinformatics Facility, Jamia Hamdard. Emoluments: Rs. 22,000 + HRA 30% Qualification: PhD or equivalent or having 3 years of research, teaching...SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
By BioStar 2179 days agogithub.com - SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes...
