Bulbul
Bioinformatician
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nQuire: A statistical framework for ploidy estimation using NGS short-read data
By Jit 2160 days agogithub.com - nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is observed. Specifically, nQuire uses next-generation sequencing data to distinguish...RA Bioinformatics at NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES
NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES Near Basant Vihar G.T. Road Bypass P.O. Box No.129 Karnal - 132001 (Haryana) WALK-IN-INTERVIEW A walk-in-Interview is proposed to be held at National Bureau of Animal Genetic Resources, Karnal...ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
By Neel 1810 days agogithub.com - ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10 samples (recommended amount - 40 since we estimate variances from...JRF Position – Bioinformatics Department, Aravind Medical Research Foundation (AMRF), Madurai.
Applications are invited from eligible candidates for the post of Junior Research Fellow (JRF) to work at the Department of Bioinformatics, Aravind Medical Research Foundation in the following DST-SERB funded project “Clinical exome analysis...LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 1777 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...
Pattern Matching Problem Solution with Perl
Last updated 3492 days ago by JitProblem at http://rosalind.info/problems/1c/ #Find all occurrences of a pattern in a string.#Given: Strings Pattern and Genome.#Return: All starting positions in Genome where Pattern appears as a substring. Use 0-based indexing.use strict;use...FiNGS: Filters for Next Generation Sequencing
By Neel 1403 days agogithub.com - Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their...-
Libraries or management tools for high throughput sequencing data
Last updated 88 days ago by LEGEGATB Library. The Genome Analysis Toolbox with de-Bruijn graph. A large part of tools developed by the GenScale team are based on this library.These methods enable the analysis of data sets of any size on multi-core desktop... RA at University of Delhi
Research Scientist Jobs opportunity in University of Delhi on temporary basis Qualifications : Ph. D. Desirable : Experience on DNA Markers, plant genome mapping and bioinformatics No. of Post : 03 Department : Genetics Salary : Rs....
