sourceforge.net - Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly ). It uses information from paired-end or long reads to optimally order and orient contigs assembled from...
As a Bioinformatician/ Computational biologist we swim in the ocean of genomic/proteomics data, and play with them with an ease. In our day to day simulation, analysis, comparative study we do need to run exhaustive programs, which might take more...
When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was used to produce the B fragilis assembly by Mick Watson’s group.
Again, running spades.py will show you the...
The amount of databases we bioinformatician deal are just HUGE … In such cases, we always need to check our server for free spaces etc. I planned this article to explains 2 simple commands that most bioinformatician want to know when they...
ftp.genomics.org.cn - An efficient tool called Connecting Overlapped Pair-End (COPE) reads, to connect overlapping pair-end reads using k-mer frequencies. We evaluated our tool on 30× simulated pair-end reads from Arabidopsis thaliana with 1% base error. COPE...
Gautam Buddha University (GBU) Noida invites applications for the follow posts
2014 March Advertisement from Gautam Buddha University (GBU)
Junior Research Fellow (JRF)
No. of Positions: 01
Educational Qualifications:
Master degree in any...
In graph theory, a string graph is an intersection graph of curves in the plane; each curve is called a "string". String graphs were first proposed by E. W. Myers in a 2005 publication.
DEPARTMENT OF MOLECULAR BIOLOGY & GENETIC ENGINEERING
COLLEGE OF BASIC SCIENCE AND HUMANITIES
G.B. PANT UNIVERSITY OF AGRICULTURE AND TECHNOLOGY
PANTNAGAR -263145, UTTARAKHAND
No. CBSH/MBGE/356
Subject: Advertisement for the award of...
github.com - AliTV, which provides interactive visualization of whole genome alignments. AliTV reads multiple whole genome alignments or automatically generates alignments from the provided data. Optional feature annotations and phylo- genetic information are...
UNIVERSITY OF HYDERABAD SCHOOL OF LIFE SCIENCES
Applications are invited from qualified individuals for a JRF/SRF position (sponsored by DBT/DST) at Prof. Jagan Pongubala’s laboratory, University of Hyderabad. Dr. Pongubala’s laboratory is...