Jit
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GenomeMapper: Simultaneous alignment of short reads against multiple genomes
By Jit 2994 days ago1001genomes.org - GenomeMapper is a short read mapping tool designed for accurate read alignments. It quickly aligns millions of reads either with ungapped or gapped alignments. It can be used to align against multiple genomes simulanteously or against a single...JRF Bioinformatics at CUK
JRF Bioinformatics Eligibility : MSc(Bio-Informatics), BE/B.Tech Location : Kasaragod Last Date : 20 Dec 2015 Hiring Process : Face to Face Interview Central University of Kerala JRF job opportunity in Central University of Kerala...AlignQC: A tool for assessing an alignment, and generating reports that are easy to share
By Jit 2920 days agowww.healthcare.uiowa.edu - Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser...JRF/Traineeship/Studentship Bioinformatics
JRF/Traineeship/Studentship Bioinformatics Eligibility : ME/M.Tech(Bio-Informatics/Bio-Chemistry Engg, CSE), MSc(Bio-Informatics, CS) Location : Delhi Last Date : 18 Dec 2015 Hiring Process : Walk - In IARI - Job...rHAT: a seed-and-extension-based noisy long read alignment tool
By Abhimanyu Singh 2873 days agogithub.com - rHAT is a seed-and-extension-based noisy long read alignment tool. It is suitable for aligning 3rd generation sequencing reads which are in large read length with relatively high error rate, especially Pacbio's Single Molecule Read-time (SMRT)...JRF Bioinformatics job position in University of Hyderabad
JRF Bioinformatics Eligibility : ME/M.Tech(Bio-Informatics/Bio-Chemistry Engg), MSc(Bio-Informatics) Location : Hyderabad Last Date : 30 Dec 2015 Hiring Process : Written-test University of Hyderabad JRF Bioinformatics job position...Shouji: a fast and efficient pre-alignment filter for sequence alignment
By Jit 2466 days agogithub.com - The ability to generate massive amounts of sequencing data continues to overwhelm the processing capacity of existing algorithms and compute infrastructures. In this work, we explore the use of hardware/software co-design and hardware acceleration...Hoffman Lab
They develop machine learning techniques to better understand chromatin biology. These models and algorithms transform high-dimensional functional genomics data into interpretable patterns and lead to new biological...Caretta – A multiple protein structure alignment and feature extraction suite
By Rahul Nayak 2056 days agowww.bioinformatics.nl - Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments...Mulan: MUltiple sequence Local AligNment and conservation visualization tool
By Rahul Nayak 3303 days agomulan.dcode.org - Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements (such as inversions and reshuffling) in any of the species. It...
