Jit
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Circlator: automated circularization of genome assemblies using long sequencing reads
By Poonam Mahapatra 2488 days agosanger-pathogens.github.io - A tool to circularize genome assemblies. The algorithm and benchmarks are described in the Genome Biology manuscript. Citation: "Circlator: automated circularization of genome assemblies using long sequencing reads", Hunt et al, Genome Biology...Genetics for Fun and Profit: Andrew Hessel at TEDxVilnius
By Jit 4204 days agoAndrew Hessel co-chairs the Bioinformatics and Biotechnology track at the Singularity University, an institution founded by futurist Ray Kurzweil and X Prize Foundation CEO Peter Diamandis, with sponsorship from world-leading organizations that...
Download blasr 1.3 version
By Jit 2457 days agoDOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following error: fail to open file './temporarySam' [bwa_aln_core] write to the...PostDocs positions in computer science in HELSINKI, FINLAND
Several university departments in the Helsinki region, Finland, are looking for postdoctoral researchers in the field of computer science and information technology. Jobs are available at: · Helsinki Institute for Information Technology HIIT,...CPCRI Kasaragod Bioinformatics PA
CENTRAL PLANTATION CROPS RESEARCH INSTITUTE (Indian Council of Agricultural Research) KASARAGOD -671 124, KERALA WALK-IN-INTERVIEW Walk-in-test cum interview for selection to the following temporary assignments sanctioned under the DBT...P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
By BioStar 2373 days agowww.fishbrowser.org - P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold genome fragments. The method is suitable for most genomes. The program could utilize Illumina Paired-end RNA-sequencing reads from target speciesies. Our method provides...La Trobe University, Melbourne, Australia
La Trobe University, Melbourne, Australia An exciting opportunity exists for a highly motivated and enthusiastic bioinformatics researcher to work in the Exosome, Secretome and Systems Biology laboratory of Dr Suresh Mathivanan. This position is...Synima: a Synteny imaging tool for annotated genome assemblies
By Abhimanyu Singh 2319 days agogithub.com - Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of these programs are included...Pandey Lab
The Pandey Lab at Johns Hopkins University is a Systems Biology lab that combines molecular biology, analytical chemistry and computational biology with various "Omics" technologies including genomics and proteomics to understand signaling pathways...ANItools web: a web tool for fast genome comparison within multiple bacterial strains
By Jit 2305 days agohttp://ani.mypathogen.cn/ - ANItools is a software package written by PERL scripts that can be run in a Linux/Unix system. If you want to compare bacterial genomes and calculate their average nucleotide identity (ANI), you could download and run this program directly. Or you...
