Jit
Enthusiast computational biologist with business dream !!!
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By Poonam Mahapatra 2793 days agosfg.stanford.edu - This website and accompaning documents are intended as a tool to help researchers dealing with non-model organisms acquire and process transcriptomic high-throughput sequencing data without having to learn extensive bioinformatics skills. It covers...Lifemap
By Jit 2785 days agolifemap-ncbi.univ-lyon1.fr - Lifemap is an interactive tool to explore the WHOLE NCBI TAXONOMY. The concept used in Lifemap is similar to the one used in cartography with tools like Google Maps© or Open Street Maps: exploring is done by zooming and panning. The...RA Bioinformatics at JNU, New Delhi, INDIA
School of Computational & Integrative Sciences Jawaharlal Nehru University New Delhi-110067, INDIA Date: April 24th. 2017 Last Date: May 6th 2017 PROJECT ID: 632 The following posts are urgently required to be filled for the Department...Flye: Fast and accurate de novo assembler for single molecule sequencing reads
By BioJoker 2063 days agogithub.com - Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The...Fastq format
By Jit 2763 days agoen.wikipedia.org - FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores. Both the sequence letter and quality score are each encoded with a...StringTie Transcript assembly and quantification for RNA-Seq
By Jit 1630 days agoccb.jhu.edu - StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length...3D de novo assembly (3D DNA) pipeline
By Jit 1757 days agogithub.com - For a detailed description of the pipeline and how it integrates with other tools designed by the Aiden Lab see Genome Assembly Cookbook on http://aidenlab.org/assembly. For the original version of the pipeline and to reproduce the...PhD positions in Genova at DIBRIS - Univ. of Genoa, Italy
PhD positions in Genova at DIBRIS - Univ. of Genoa (Italy) http://www.disi.unige.it/person/MasulliF/ricerca/PhDinGenova2017.html The call for some funded positions for the 3 years PhD studies at the Department of Informatics, Bioengineering,...RA Bioinformatics at NATIONAL INSTITUTE OF BIOMEDICAL GENOMICS, INDIA
NATIONAL INSTITUTE OF BIOMEDICAL GENOMICS (An Autonomous Institution of the Government of India) P.O.: N.S.S., Kalyani 741251, West Bengal Advertisement No. 137/ESTB/NIBMG/17-18 Position available Project Description: Several positions are...HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from...
By BioStar 1703 days agogithub.com - HiCanu, a significant modification of the Canu assembler designed to leverage the full potential of HiFi reads via homopolymer compression, overlap-based error correction, and aggressive false overlap filtering. More...
