Jit
Enthusiast computational biologist with business dream !!!
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Carefully opt for human reference genome
By biogeek 1740 days agolh3.github.io - Heng Li posted several issues with the human reference genomes given in these resources and suggests the following compressed FASTA file to be used as hg38/GRCh38 human reference genome. if you map reads to GRCh38 or hg38, use the...CSIR-INSTITUTE OF GENOMICS & INTEGRATIVE BIOLOGY
CSIR-INSTITUTE OF GENOMICS & INTEGRATIVE BIOLOGY, Mall Road, Delhi 110007 POSITIONS OPEN FOR TEMPORARY RESEARCH PROJECT POSTS (Date of interview 23rd September 2013 at 10:30 AM) CSIR-Institute of Genomics & Integrative Biology...Circlator: automated circularization of genome assemblies using long sequencing reads
By Poonam Mahapatra 2384 days agosanger-pathogens.github.io - A tool to circularize genome assemblies. The algorithm and benchmarks are described in the Genome Biology manuscript. Citation: "Circlator: automated circularization of genome assemblies using long sequencing reads", Hunt et al, Genome Biology...Python and BioPython Tutorial
By Manshi Raghubanshi 4110 days ago Comments (17)www.biotnet.org - A quickstart tutorial that allows to become familiar with the Python language. The exercises expect knowledge of basic concepts of programming. A group of 2nd year computer science students with no previous Python knowledge required 60'-90' to...
Download blasr 1.3 version
By Jit 2354 days agoDOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following error: fail to open file './temporarySam' [bwa_aln_core] write to the...Research Project Posts for CSIR Project, Delhi
Positions Open For Temporary Research Project Posts for CSIR Project, Delhi CSIR is looking for bright young candidates to get involved in building algorithms and platforms for large biological data analyses in the areas of comparative genomics,...Bioinformatics Algorithm Demonstrations and Tutorials
By Jitendra Narayan 4104 days ago Comments (60)www.cybertory.org - Abstract This project presents demonstrations of selected computer science algorithms important in bioinformatics, implemented in the spreadsheet program Microsoft Excel. Spreadsheets provide an interesting platform for demonstration of...P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
By BioStar 2269 days agowww.fishbrowser.org - P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold genome fragments. The method is suitable for most genomes. The program could utilize Illumina Paired-end RNA-sequencing reads from target speciesies. Our method provides...4273π: Bioinformatics education on low cost ARM hardware
By Jitendra Narayan 4100 days ago4273π, an operating system image for Raspberry Pi based on Raspbian LinuxSynima: a Synteny imaging tool for annotated genome assemblies
By Abhimanyu Singh 2216 days agogithub.com - Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of these programs are included...
