Archana Malhotra
Computational Biologist
Our Sponsors
Related items
rHAT: a seed-and-extension-based noisy long read alignment tool
By Abhimanyu Singh 2303 days agogithub.com - rHAT is a seed-and-extension-based noisy long read alignment tool. It is suitable for aligning 3rd generation sequencing reads which are in large read length with relatively high error rate, especially Pacbio's Single Molecule Read-time (SMRT)...Bioinformatics Symposium
This 2 day symposium will focus on topics in the below mentioned areas. Experts from India and Japan in this fields will deliver lectures and contribute in discussions. This will provide an opportunity to the participants to interact and...miniasm: very fast OLC-based de novo assembler for noisy long reads
By Jit 2602 days agogithub.com - Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream...Bioinformatics Jokes !!
By Jitendra Prajapati 3432 days ago Comments (2)Collection of few bioinformatics jokes !!ALPACA: A hybrid strategy for assembly of genomic DNA shotgun sequencing reads.
By Seema Singh 2449 days agogithub.com - ALPACA requires Celera Assembler 8.3 or later. It is recommended to build Celera Assembler from source. (Why? The pre-built binaries CA_8.3rc1 and CA8.3rc2 will work for any large data set. Detail paper...Essentials of Statistics and Data Analysis using R
Clinical Development Services Agency (CDSA) is an extramural unit of Translational Health Science and Technology Institute (THSTI), Department of Biotechnology, Ministry of Science & Technology, Government of India. CDSA has a national mandate...BlasR Mapping single molecule sequencing reads using Basic Local Alignment with Successive...
By Jit 2426 days agobix.ucsd.edu - BLASR (Basic Local Alignment with Successive Refinement) for mapping Single Molecule Sequencing (SMS) reads that are thousands to tens of thousands of bases long with divergence between the read and genome dominated by insertion and deletion...ReMILO: reference assisted misassembly detection algorithm using short and long reads.
By Jit 2382 days agogithub.com - ReMILO, a reference assisted misassembly detection algorithm that uses both short reads and PacBio SMRT long reads. ReMILO aligns the initial short reads to both the contigs and reference genome, and then constructs a novel data structure called...MetaPred2CS
By Manisha Mishra 2872 days agogithub.com - MetaPred2CS Web server is a meta-predictor based on Support Vector Machine (SVM) that combines 6 individual sequence based protein-protein interaction prediction methods to predict prokaryotic two-component...Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
By Rahul Nayak 2276 days agosourceforge.net - Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like...
