Abhimanyu Singh
A bioinformatics beginner
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Senior Scientist (Agricultural Bio-informatics) (One post)
Agricultural Scientists Recruitment Board Qualifications Essential: Doctoral degree in Bio-informatics/ Biotechnology/Molecular Biology and Biotechnology/Life Sciences/ Computer Sciences with specialization in Bio-informatics including relevant...RStudio
By Jitendra Narayan 4091 days ago Comments (1)http://www.rstudio.com/ - RStudio IDE is a powerful and productive user interface for R. It’s free and open source, and works great on Windows, Mac, and Linux. The developers and expert trainers are the authors of several popular R packages, including ggplot2, plyr,...Rebaler: program for conducting reference-based assemblies using long reads.
By Jit 2730 days agogithub.com - Rebaler is a program for conducting reference-based assemblies using long reads. It relies mainly on minimap2 for alignment and Racon for making consensus sequences. I made Rebaler for bacterial genomes (specifically for the...SViper: Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact...
By Neel 2270 days agogithub.com - Call sviper ~$ ./sviper -s short-reads.bam -l long-reads.bam -r ref.fa -c variants.vcf -o polished_variants This will output a polished_variants.vcf file, that contains all the refined variants. Sometimes it is helpful to look at the...Research Associate @ TATA MEMORIAL CENTRE ADVANCED CENTRE FOR TREATMENT, RESEARCH AND EDUCATION IN...
TATA MEMORIAL CENTRE ADVANCED CENTRE FOR TREATMENT, RESEARCH AND EDUCATION IN CANCER KHARGHAR, NAVI MUMBAI – 410210 Website: www.actrec.gov.in; Ph: 27405000 No. ACTREC/Advt./ 66 /2014 23rd December, 2014 Research Associate International...SLR-superscaffolder: A scaffold assemble pipeline for stLFR reads.
By Jit 2215 days agogithub.com - This is a scaffold assembler designed for stLFR reads[1]. It uses the link-reads information from stLFR reads to assemble contigs to scaffolds. Here is an illustration of this pipeline:Comparative Genomics in Ensembl
By Rahul Nayak 4066 days agoThe Ensembl browser provides viewable whole-genome alignments, homologues and phylogenetic gene trees, protein families, and ancestral sequences. Learn how to view and export these data in this video.mixtureS: a novel tool for bacterial strain reconstruction from reads
By BioStar 2027 days agowww.cs.ucf.edu - mixtureS that can de novo identify bacterial strains from shotgun reads of a clonal or metagenomic sample, without prior knowledge about the strains and their variations. Tested on 243 simulated datasets and 195 experimental datasets, mixtureS...Bioinformatics Scripts
By Jit 4064 days agomilkweedgenome.org - Some of the useful bioinformatics scripts. For example ... contig-stats.pl is a Perl script that will automatically describe features of a sequence assembly. http://milkweedgenome.org/?q=scriptsBioinformatics tools for telomere to telomere assembly !
By BioStar 1665 days agooptimize HiFi reads
