Our Sponsors
Related items
RNA-seq workflow: gene-level exploratory analysis and differential expression
By Jit 1140 days agomaster.bioconductor.org - Here we walk through an end-to-end gene-level RNA-seq differential expression workflow using Bioconductor packages. We will start from the FASTQ files, show how these were quantified to the reference transcripts, and prepare gene-level count...
Pathway Analysis
Last updated 3697 days ago by Rahul Agarwal Comments (2)Pathway Analysis is usually performed with aim to enrich the genes with their functional information and reveal the underlying biological mechanisms pursue by genes. Pathway Analysis is not only limited to what biological pathways a particular set...kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
By Jit 2146 days ago Comments (1)pachterlab.github.io - kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for...Calling narrow and broad peaks from ChIP-Seq data
By Strand 3398 days agoCalling narrow and broad peaks from ChIP-Seq dataWebinar on Implications of Next Generation Sequencing in Molecular Diagnosis of Cancer on 28 Sep...
By Strand 3005 days agoLive webinar on Implications of NGS in molecular diagnosis of cancerSurrogate Variable Analysis (SVA)
By Jit 3676 days agoThe sva package contains functions for removing batch effects and other unwanted variation in high-throughput experiment.Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
By BioStar 1753 days agogithub.com - Rcorrector has an accuracy higher than or comparable to existing methods, including the only other method (SEECER) designed for RNA-seq reads, and is more time and memory efficient. With a 5 GB memory footprint for 100 million reads, it can be run...Encode sequencing data freely available to download and use for academic means
By Rahul Agarwal 3907 days ago Comments (3)genome.ucsc.edu - In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA, including modified histones and transcription factors, followed...deepTools
By Martin Jones 3667 days agoUser-friendly tools for the normalization and visualization of deep-sequencing data
