Abhimanyu Singh
A bioinformatics beginner
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By Rahul Nayak 2522 days agohttps://cblab.org/camsa/ - CAMSA – is a tool for Comparative Analysis and Merging of Scaffold Assemblies, distributed both as a standalone software package and as Python library under the MIT license. Main features: works with any number of...RNA-seq Analysis Workshop Course Materials
By Jit 2335 days agochagall.med.cornell.edu - RNAseq can be roughly divided into two "types": Reference genome-based - an assembled genome exists for a species for which an RNAseq experiment is performed. It allows reads to be aligned against the reference genome and significantly improves...GWASpro: A High-Performance Genome-Wide Association Analysis Server
By Rahul Nayak 2178 days agobioinfo.noble.org - GWASpro supports building complex design matrices, by which complex experimental designs that may include replications, treatments, locations and times, can be accounted for in the linear mixed model (LMM). GWASpro is optimized to handle GWAS data...Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes
By Abhi 192 days agogithub.com - Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is to process your data with a broad set of tools, so that you can get to the fun part of analyses quicker! Bactopia can be split into two main...Mesquite: A modular system for evolutionary analysis
By Rahul Nayak 2685 days agogithub.com - Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics,...GIGGLE: a search engine for large-scale integrated genome analysis
By Jit 2510 days agogithub.com - GIGGLE is a genomics search engine that identifies and ranks the significance of genomic loci shared between query features and thousands of genome interval files. GIGGLE (https://github.com/ryanlayer/giggle) scales to billions of intervals and is...Mesquite: A modular system for evolutionary analysis
By Rahul Nayak 2448 days agomesquiteproject.org - Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics,...snakepipes: A toolkit based on snakemake and python for analysis of NGS data
By Jit 2005 days agogithub.com - snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-seq* scRNA-seq Hi-C Whole Genome Bisulfite Seq/WGBS (*Also available in...GenomeTools: The versatile open source genome analysis software
By Neel 1026 days agohttp://genometools.org/ - The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named...Calculate the significance of the difference between two trends
By BioStar 621 days ago Comments (1)To calculate the significance of the difference between two trends, you can use a statistical test such as a t-test or ANOVA (analysis of variance).
