http://www.phyloxml.org/ - phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly used features, such as taxonomic information, gene names and identifiers, branch...
github.com - The primary goal of the course is for students to be grounded in theory and leave the course empowered to conduct independent genomic analyses. We will study the leading computational and quantitative approaches for comparing and analyzing...
NBIS is now looking for a new member to support Swedish research in evolutionary, comparative, and population genomics, with a particular focus on conifer genomics.
Your tasks will consist of:
Advanced bioinformatics analyses within research...
CSIR-Institute of Genomics & Integrative Biology (IGIB) is a premier Institute of Council of Scientific
and Industrial Research (CSIR), engaged in research of national importance in the areas of genomics,
molecular medicine, bioinformatics and...
schneebergerlab.github.io - SyRI is a comprehensive tool for predicting genomic differences between related genomes using whole-genome assemblies (WGA). The assemblies are aligned using whole-genome alignment tools, and these alignments are then used as input to SyRI. SyRI...
Lab are included within the Genomics, Bioinformatics and Evolution group of the UAB, and collaborate closely with other researchers in the Barcelona area, such as Xavier Estivill of the Centre for Genomic Regulation (CRG), Juan R González of the...
github.com - If you planning on conducting a study involving dozens of large genomes, then you do not have to run all pairwise synteny alignments .. simply try kraken: A universal genomic coordinate translator for comparative genomics
github.com - Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.
https://github.com/tanghaibao/jcvi
More at https://github.com/tanghaibao/jcvi/wiki