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SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
By Robert M Willioms 3095 days agogithub.com - SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.HiGlass: a tool for exploring genomic contact matrices and tracks.
By Jit 2917 days agohttp://higlass.io/ - HiGlass is a tool for exploring genomic contact matrices and tracks. Please take a look at the examples and documentation for a description of the ways that it can be configured to explore and compare contact matrices. To load private data, HiGlass...swgis v2.0 : a seqword genomic island sniffer
By Abhimanyu Singh 2773 days agoeugi.bi.up.ac.za - swgis v2.0 is the modified version of the seqword genomic island sniffer. this version is specifically optimized for predicting genomic islands in eukaryotic genomes. swgis v2.0 was tested on several eukaryotic species of different lineages....Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
By Jit 2562 days agogenomearchitect.github.io - Apollo is a plug-in for the JBrowse Genome Viewer. In addition to genes and pseudogenes, users can annotate ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions, and transposable elements; each annotation type has its own...Phytozome v12.1: plant science community hub for accessing palnts genomic data
By Surabhi Chaudhary 2272 days agophytozome.jgi.doe.gov - Phytozome, the Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute, provides JGI users and the broader plant science community a hub for accessing, visualizing and analyzing JGI-sequenced plant genomes, as well as...GenoFig: a user-friendly application for the visualization and comparison of genomic regions
By BioStar 669 days agoforgemia.inra.fr - Tool for graphical vizualisation of annotated genetic regions, and homologous regions comparison. It is an independent recoding of Easyfig 2 initially developped by at the S. Beatson Lab [https://mjsull.github.io/Easyfig/] Download the GenoFig...
Which are the best statistical programming languages to study for a bioinformatician?
Jitendra Narayan 4713 days agoSmyth Lab
Statistical functional genomics in experimental medicine The genome projects and the accelerated development of high-throughput genomic technologies such as microarrays have revolutionised biology. Making the most of this revolution requires the...Welch Lab
They are based in the Department of Genetics at the University of Cambridge. The research covers diverse areas of evolutionary biology, and molecular evolution in particular. It combines theoretical and empirical approaches, and particularly...ISCB-Asia 2013 Translational Bioinformatics Conference
ISCB-Asia 2013 Translational Bioinformatics Conference Seoul, Korea October 2 - 4, 2013 For more information visit: http://www.snubi.org/TBC2013/
