Jit
Enthusiast computational biologist with business dream !!!
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gSearch: a fast and flexible general search tool for whole-genome sequencing
By Jit 2301 days agoml.ssu.ac.kr - gSearch compares sequence variants in the Genome Variation Format (GVF) or Variant Call Format (VCF) with a pre-compiled annotation or with variants in other genomes. Its search algorithms are subsequently optimized and implemented in a...SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
By Jit 2266 days agowww.bioinformatics.babraham.ac.uk - SeqMonk is a program to enable the visualisation and analysis of mapped sequence data. It was written for use with mapped next generation sequence data but can in theory be used for any dataset which can be expressed as a series of genomic...Figeno: Tool for plotting sequencing data along genomic coordinates.
By LEGE 68 days agogithub.com - Tool for plotting sequencing data along genomic coordinates. FIGENO is a FIGure GENerator for GENOmics With figeno, you can plot various types of sequencing data along genomic coordinates. Video...MGERT: Mobile Genetic Elements Retrieving Tool
By Neel 2016 days agogithub.com - MGERT is a computational pipeline for easy retrieving of MGE's coding sequences of a particular family from genome assemblies. MGERT utilizes several established bioinformatic tools combined into single pipeline which hides different...jobTree based python wrapper to run the genome simulation tool suite Evolver
By Jit 2542 days agogithub.com - evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver, eSC also automatically creates statistical summaries of the simulation...Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput...
By Jit 2411 days agogithub.com - Heap, that enables robustly sensitive and accurate calling of SNPs, particularly with a low coverage NGS data, which must be aligned to the reference genome sequences in advance. To reduce false positive SNPs, Heap determines genotypes and calls...Epiviz: an interactive visualization tool for functional genomics data.
By Jit 2330 days agohttps://epiviz.github.io/ - Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigation like other genome browsers, but allows multiple visualizations of data within genomic regions using scatterplots, heatmaps and other...karyoploteR: plot whole genomes with arbitrary data
By Abhimanyu Singh 2487 days agobernatgel.github.io - karyoploteR is an R package to create karyoplots, that is, representations of whole genomes with arbitrary data plotted on them. It is inspired by the R base graphics system and does not depend on other graphics packages. The aim of karyoploteR...Scripts for the analysis of HGT in genome sequence data.
By Jit 2551 days agogithub.com - Scripts for the analysis of HGT in genome sequence data
