Poonam Mahapatra
Bioinformatics Researcher
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Dumontier Lab
Our research aims to better understand how living systems respond to chemical agents. A key aspect of our approach involves using computational frameworks that are powered by formal (i.e. machine understandable) semantics to make effectively use of...NGS teaching material
By Jit 2825 days agomarinetics.org - High throughput sequencing (HTS) technologies are being applied to a wide range of important topics in biology. However, the analyses of non-model organisms, for which little previous sequence information is available, pose specific problems. This...IBL laboratory
The IBL laboratory focuses on the multi-disciplinary analyses of the global responses of model microorganisms, cyanobacteria (mainly Synechocystis PCC6803) and yeasts (mainly Saccharomyces cerevisae) to environmental stresses triggered by oxidative...UpSetR Shiny App!
By Jit 2816 days agogehlenborglab.shinyapps.io - UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective representation of associated data, such...The Upton (VBRC) lab
This Bioinformatics Resource (Virology.ca, the Canadian half of the now defunct VBRC) focuses on large DNA viruses: Poxviruses African Swine Fever Viruses Iridoviruses Baculoviruses Research Area Custom searches of the viral...DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation...
By Jit 2811 days ago Comments (1)github.com - DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies Our work is published in Scientific Reports: Ye, C. et al. DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous...Welch Lab
They are based in the Department of Genetics at the University of Cambridge. The research covers diverse areas of evolutionary biology, and molecular evolution in particular. It combines theoretical and empirical approaches, and particularly...SSPACE
By Jit 2795 days agowww.baseclear.com - SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is unique in offering the possibility to manually control the scaffolding process. By using the distance information of paired-end and/or...Computational Proteomics : Lets remember the basics
By Jitendra Narayan 4168 days ago Comments (5)Basics of computational proteomicsTen International Scholarships for Indian Biotechnology and Bioinformatics Students
By Priya Singh 2790 days ago Comments (10)10 International Scholarships for Indian Students
