Jit
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Cerulean: A hybrid assembly using high throughput short and long reads
By Rahul Nayak 2366 days agosourceforge.net - Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads. Cerulean v0.1 has been implemented with bacterial genomes in mind. The method is fully described in...RA Bioinformatics at ICGED
Research Associate Position at ICGEB, New Delhi with Dr. Amit Sharma Starting 15th July 2015, the position relates to a project specifically for in silico drug docking, screening, design, optimisation and linkage with active chemists....FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
By Jit 2290 days agogithub.com - Here is the command to run the tool: python finisherSC.py destinedFolder mummerPath If you are running on server computer and would like to use multiple threads, then the following commands can generate 20 threads to run FinisherSC. python...LRCstats: a tool for evaluating long reads correction methods
By Aaryan Lokwani 2288 days agogithub.com - LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produced by Pacific Biosciences. The reads produced by third generation...Research Associate Bioinformatician @ University of Bristol
This 0.5 fte role will have specific responsibility for the bioinformatic side of a Health Innovation Challenged Fund (HICF) research project investigating the application of Next Generation Sequencing (NGS) technologies to the analysis of Minimal...Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
By Rahul Nayak 2230 days agosourceforge.net - Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like...RA Bioinformatics at IISR
Bioinformatics Research Associate at Indian Institute of Spice Research Pay Scale: Rs. 40,000/-per month +HRA (as admissible) for Ph.D. holders and Rs. 38,000/-p.m. + HRA (as admissible) for Master degree holder Qualifications: a)Essential...Flye: Fast and accurate de novo assembler for single molecule sequencing reads
By Rahul Nayak 1970 days agogithub.com - Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The...Bioinformatics Project Assistant at Vector Control Research Centre (VCRC), Puducherry.
Applications are invited upto 27.07.2015 for filling up of one post of Project Assistant (UNRESERVED) to work under ICMR funded Non-Institutional adhoc project entitled “Biomedical Informatics centre’s of ICMR” at Vector Control Research Centre...
