Abhimanyu Singh
A bioinformatics beginner
Our Sponsors
Related items
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
By Manisha Mishra 3094 days agogithub.com - AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using AlignGraph AlignGraph --read1 reads_1.fa --read2 reads_2.fa --contig contigs.fa...MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
By Neel 3791 days agojournals.plos.org - MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all the major sequencing technologies,...AGORA: Algorithm for Gene Order Reconstruction in Ancestors
By Jit 1681 days agogithub.com - AGORA stands for “Algorithm for Gene Order Reconstruction in Ancestors” and was developed by Matthieu Muffato in the DYOGEN Laboratory at the École normale supérieure in Paris in 2008. // | | // ) ) // ) )...MEC: Contig Misassembly Correction
By BioStar 2436 days agogithub.com - MEC, to identify and correct misassemblies in contigs. Firstly, MEC takes fragment coverage as the feature to detect the candidate misassemblies. Then, it can distinguish a large number of false positives from the candidate misassemblies based on...medaka: Sequence correction provided by ONT Research
By BioStar 2332 days agogithub.com - medaka is a tool to create a consensus sequence from nanopore sequencing data. This task is performed using neural networks applied from a pileup of individual sequencing reads against a draft assembly. It outperforms graph-based methods...You can't install David Brownlee ;-)
By Jit 2715 days agoDon't be silly, you can't install David Brownlee ;-)ARC: pipeline which facilitates iterative, reference guided de novo assemblies
By Jit 2994 days agoibest.github.io - ARC is a pipeline which facilitates iterative, reference guided de novo assemblies with the intent of: Reducing time in analysis and increasing accuracy of results by only considering those reads which should assemble...
Learning Python Programming - a bioinformatician perspective !
Last updated 3067 days ago by Rahul Nayak Comments (1)Python Programming is a general purpose programming language that is open source, flexible, powerful and easy to use. One of the most important features of python is its rich set of utilities and libraries for data processing and analytics...Janggu - Deep learning for Genomics
By Jit 2023 days agogithub.com - Janggu is a python package that facilitates deep learning in the context of genomics. The package is freely available under a GPL-3.0 license. Detail tutorial at https://janggu.readthedocs.io/en/latest/ USE...modelStudio: a package automates the explanation of machine learning predictive models
By Jit 2449 days agomodeloriented.github.io - The modelStudio package automates the explanation of machine learning predictive models. This package generates advanced interactive and animated model explanations in the form of a serverless HTML site. It...
