Rahul Agarwal
I'm a Bioinformatician and Programmer
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nQuire: a statistical framework for ploidy estimation using next generation sequencing
By Jit 2809 days agogithub.com - nQuire provides a statistical framework to study organisms with intraspecific variation in ploidy. nQuire is likely to be useful in epidemiological studies of pathogens, artificial selection experiments, and for historical or ancient samples where...List of universities offering Bachelor or Master bioinformatics degree in Pakistan
By Reshma Khatun 3279 days agoThere are a lot of universities offering Bachelor or Master degree in Pakistan. Following are the list of few intitute/universitieslordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
By BioJoker 2755 days agogithub.com - lordFAST is a sensitive tool for mapping long reads with high error rates. lordFAST is specially designed for aligning reads from PacBio sequencing technology but provides the user the ability to change alignment parameters depending on the reads...Research Associate Bioinformatics Central Institute for Research on Buffaloes (CIRB) - Hisar,...
Research Associate (RA) under Network Project on Agricultural Bioinformatics Name of the Project : Network Project on Agricultural Bioinformatics Number of positions One Qualifications : Ph.D Degree in Bioinformatics/Biotechnology/...Flye: Fast and accurate de novo assembler for single molecule sequencing reads
By BioJoker 2628 days agogithub.com - Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The...RA Bioinformatics at TEZPUR UNIVERSITY
Walk-in-interview will be held on 23 February, 2015 at 11.00 a.m. for the following temporary positions in the DBT (U-EXCEL) sponsored project entitled “Sequencing genomes of some bacteria that invade/resides in tomato plant” under the Principal...mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
By Jit 2403 days agogithub.com - mosdepth can output: per-base depth about 2x as fast samtools depth--about 25 minutes of CPU time for a 30X genome.mean per-window depth given a window size--as would be used for CNV calling.the mean per-region given a BED file of regions.a...RA WALK-IN-INTERVIEW @ ACTREC
No. ACTREC/Advt./ 7 /2015 Title of the Project Research Associate (One position) DBTs Biotechnology/Bioinformatics training centre PI Dr. Ashok Varma Duration of the Project Six Months from the date of appointment, can be extended...FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
By Jit 2328 days agobioinfo.ut.ee - FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human genome, counts the...Summer Intern - Research Bioinformatics
Be proficient in LINUX, know perl or python, understand biology and Next Generation Sequencing. The intern will port Agile Assay Design pipelines into Galaxy. The intern will also learn to develope his/her own bioinformatics pipelines for PCR or...
